CloneSet148


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
23	5	3	0.975	compound_stmt

Clone Abstraction

Parameter Bindings


Bio/Entrez/__init__.py
Bio/Entrez/__init__.py
Bio/Entrez/__init__.py
Bio/Entrez/__init__.py
Bio/Entrez/__init__.py

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	20	136	Bio/Entrez/__init__.py
2	23	157	Bio/Entrez/__init__.py
3	17	181	Bio/Entrez/__init__.py
4	17	199	Bio/Entrez/__init__.py
5	23	217	Bio/Entrez/__init__.py

Clone Instance
1

Line Count
20

Source Line
136

Source File

Bio/Entrez/__init__.py

def elink( **keywds):
                    
    """ELink checks for linked external articles and returns a handle.

    ELink checks for the existence of an external or Related Articles link
    from a list of one or more primary IDs;  retrieves IDs and relevancy
    scores for links to Entrez databases or Related Articles; creates a
    hyperlink to the primary LinkOut provider for a specific ID and
    database, or lists LinkOut URLs and attributes for multiple IDs.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables)

Clone Instance
2

Line Count
23

Source Line
157

Source File

Bio/Entrez/__init__.py

def einfo( **keywds):
                    
    """EInfo returns a summary of the Entez databases as a results handle.

    EInfo provides field names, index term counts, last update, and
    available links for each Entrez database.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.einfo())
    print record['DbList']
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables)

Clone Instance
3

Line Count
17

Source Line
181

Source File

Bio/Entrez/__init__.py

def esummary( **keywds):
                       
    """ESummary retrieves document summaries as a results handle.

    ESummary retrieves document summaries from a list of primary IDs or
    from the user's environment.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables)

Clone Instance
4

Line Count
17

Source Line
199

Source File

Bio/Entrez/__init__.py

def egquery( **keywds):
                      
    """EGQuery provides Entrez database counts for a global search.

    EGQuery provides Entrez database counts in XML for a single search
    using Global Query.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html

    Return a handle to the results in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables)

Clone Instance
5

Line Count
23

Source Line
217

Source File

Bio/Entrez/__init__.py

def espell( **keywds):
                     
    """ESpell retrieves spelling suggestions, returned in a results handle.

    ESpell retrieves spelling suggestions, if available.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.espell(term="biopythooon")) 
    print record["Query"] 
    print record["CorrectedQuery"] 
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables)

Clone Abstraction

Parameter Count: 3

Parameter Bindings

def [[#variable76c13aa0]]( **keywds):
   [[#variable76c13a40]]
  cgi = [[#variable76c139c0]]
  variables = { } 
  variables.update(keywds) 
  return _open(cgi,variables)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#76c13aa0]]`	espell
1	2	`[[#76c13aa0]]`	egquery
1	3	`[[#76c13aa0]]`	esummary
1	4	`[[#76c13aa0]]`	einfo
1	5	`[[#76c13aa0]]`	elink
2	1	`[[#76c13a40]]`	"""ESpell retrieves spelling suggestions, returned in a results handle. ESpell retrieves spelling suggestions, if available. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.espell(term="biopythooon")) print record["Query"] print record["CorrectedQuery"] """
2	2	`[[#76c13a40]]`	"""EGQuery provides Entrez database counts for a global search. EGQuery provides Entrez database counts in XML for a single search using Global Query. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html Return a handle to the results in XML format. Raises an IOError exception if there's a network error. """
2	3	`[[#76c13a40]]`	"""ESummary retrieves document summaries as a results handle. ESummary retrieves document summaries from a list of primary IDs or from the user's environment. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """
2	4	`[[#76c13a40]]`	"""EInfo returns a summary of the Entez databases as a results handle. EInfo provides field names, index term counts, last update, and available links for each Entrez database. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.einfo()) print record['DbList'] """
2	5	`[[#76c13a40]]`	"""ELink checks for linked external articles and returns a handle. ELink checks for the existence of an external or Related Articles link from a list of one or more primary IDs; retrieves IDs and relevancy scores for links to Entrez databases or Related Articles; creates a hyperlink to the primary LinkOut provider for a specific ID and database, or lists LinkOut URLs and attributes for multiple IDs. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """
3	1	`[[#76c139c0]]`	"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi"
3	2	`[[#76c139c0]]`	"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi"
3	3	`[[#76c139c0]]`	"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi"
3	4	`[[#76c139c0]]`	"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi"
3	5	`[[#76c139c0]]`	"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi"