CloneSet148


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
23530.975compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
120136
Bio/Entrez/__init__.py
223157
Bio/Entrez/__init__.py
317181
Bio/Entrez/__init__.py
417199
Bio/Entrez/__init__.py
523217
Bio/Entrez/__init__.py
Clone Instance
1
Line Count
20
Source Line
136
Source File
Bio/Entrez/__init__.py

def elink( **keywds):
                    
    """ELink checks for linked external articles and returns a handle.

    ELink checks for the existence of an external or Related Articles link
    from a list of one or more primary IDs;  retrieves IDs and relevancy
    scores for links to Entrez databases or Related Articles; creates a
    hyperlink to the primary LinkOut provider for a specific ID and
    database, or lists LinkOut URLs and attributes for multiple IDs.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables) 


Clone Instance
2
Line Count
23
Source Line
157
Source File
Bio/Entrez/__init__.py

def einfo( **keywds):
                    
    """EInfo returns a summary of the Entez databases as a results handle.

    EInfo provides field names, index term counts, last update, and
    available links for each Entrez database.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.einfo())
    print record['DbList']
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables) 


Clone Instance
3
Line Count
17
Source Line
181
Source File
Bio/Entrez/__init__.py

def esummary( **keywds):
                       
    """ESummary retrieves document summaries as a results handle.

    ESummary retrieves document summaries from a list of primary IDs or
    from the user's environment.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables) 


Clone Instance
4
Line Count
17
Source Line
199
Source File
Bio/Entrez/__init__.py

def egquery( **keywds):
                      
    """EGQuery provides Entrez database counts for a global search.

    EGQuery provides Entrez database counts in XML for a single search
    using Global Query.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html

    Return a handle to the results in XML format.

    Raises an IOError exception if there's a network error.
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables) 


Clone Instance
5
Line Count
23
Source Line
217
Source File
Bio/Entrez/__init__.py

def espell( **keywds):
                     
    """ESpell retrieves spelling suggestions, returned in a results handle.

    ESpell retrieves spelling suggestions, if available.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.espell(term="biopythooon")) 
    print record["Query"] 
    print record["CorrectedQuery"] 
    """ 
    cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi" 
    variables = { } 
    variables.update(keywds) 
    return _open(cgi,variables) 


Clone AbstractionParameter Count: 3Parameter Bindings

def [[#variable76c13aa0]]( **keywds):
   [[#variable76c13a40]]
  cgi = [[#variable76c139c0]]
  variables = { } 
  variables.update(keywds) 
  return _open(cgi,variables) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#76c13aa0]]
espell 
12[[#76c13aa0]]
egquery 
13[[#76c13aa0]]
esummary 
14[[#76c13aa0]]
einfo 
15[[#76c13aa0]]
elink 
21[[#76c13a40]]
"""ESpell retrieves spelling suggestions, returned in a results handle.

    ESpell retrieves spelling suggestions, if available.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.espell(term="biopythooon")) 
    print record["Query"] 
    print record["CorrectedQuery"] 
    """ 
22[[#76c13a40]]
"""EGQuery provides Entrez database counts for a global search.

    EGQuery provides Entrez database counts in XML for a single search
    using Global Query.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html

    Return a handle to the results in XML format.

    Raises an IOError exception if there's a network error.
    """ 
23[[#76c13a40]]
"""ESummary retrieves document summaries as a results handle.

    ESummary retrieves document summaries from a list of primary IDs or
    from the user's environment.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
24[[#76c13a40]]
"""EInfo returns a summary of the Entez databases as a results handle.

    EInfo provides field names, index term counts, last update, and
    available links for each Entrez database.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.

    Short example:

    from Bio import Entrez 
    record = Entrez.read(Entrez.einfo())
    print record['DbList']
    """ 
25[[#76c13a40]]
"""ELink checks for linked external articles and returns a handle.

    ELink checks for the existence of an external or Related Articles link
    from a list of one or more primary IDs;  retrieves IDs and relevancy
    scores for links to Entrez databases or Related Articles; creates a
    hyperlink to the primary LinkOut provider for a specific ID and
    database, or lists LinkOut URLs and attributes for multiple IDs.

    See the online documentation for an explanation of the parameters:
    http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html

    Return a handle to the results, by default in XML format.

    Raises an IOError exception if there's a network error.
    """ 
31[[#76c139c0]]
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi" 
32[[#76c139c0]]
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi" 
33[[#76c139c0]]
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi" 
34[[#76c139c0]]
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi" 
35[[#76c139c0]]
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi"