CloneSet28


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
14	5	6	0.972	test_pair_plus

Clone Abstraction

Parameter Bindings


Bio/Restriction/Restriction_Dictionary.py
Bio/Restriction/Restriction_Dictionary.py
Bio/Restriction/Restriction_Dictionary.py
Bio/Restriction/Restriction_Dictionary.py
Bio/Restriction/Restriction_Dictionary.py

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	14	556	Bio/Restriction/Restriction_Dictionary.py
2	14	1623	Bio/Restriction/Restriction_Dictionary.py
3	14	2192	Bio/Restriction/Restriction_Dictionary.py
4	14	6310	Bio/Restriction/Restriction_Dictionary.py
5	14	6901	Bio/Restriction/Restriction_Dictionary.py

Clone Instance
1

Line Count
14

Source Line
556

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -24,24,10,"GCANNNNNNTGC"),"compsite":"(?P<AlfI>GCA......TGC)|(?P<AlfI_as>GCA......TGC)","dna":None,"freq":4096,"fst3": -24,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":2,"ovhgseq":"NN","results":None,"scd3":10,"scd5":24,"site":"GCANNNNNNTGC"

Clone Instance
2

Line Count
14

Source Line
1623

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -24,24,10,"CGANNNNNNTGC"),"compsite":"(?P<BcgI>CGA......TGC)|(?P<BcgI_as>GCA......TCG)","dna":None,"freq":4096,"fst3": -24,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":2,"ovhgseq":"NN","results":None,"scd3":10,"scd5":24,"site":"CGANNNNNNTGC"

Clone Instance
3

Line Count
14

Source Line
2192

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -8, -24,24,8,"GAGNNNNNCTC"),"compsite":"(?P<BplI>GAG.....CTC)|(?P<BplI_as>GAG.....CTC)","dna":None,"freq":4096,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"GAGNNNNNCTC"

Clone Instance
4

Line Count
14

Source Line
6310

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -8, -24,24,8,"AAGNNNNNCTT"),"compsite":"(?P<FalI>AAG.....CTT)|(?P<FalI_as>AAG.....CTT)","dna":None,"freq":4096,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"AAGNNNNNCTT"

Clone Instance
5

Line Count
14

Source Line
6901

Source File

Bio/Restriction/Restriction_Dictionary.py

           "charac":( -8, -24,24,8,"GAYNNNNNVTC"),"compsite":"(?P<Hin4I>GA[CT].....[ACG]TC)|(?P<Hin4I_as>GA[CGT].....[AG]TC)","dna":None,"freq":512,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"GAYNNNNNVTC"

Clone Abstraction

Parameter Count: 6

Parameter Bindings

"charac":( - [[#variable60d54de0]], -24,24, [[#variable60d54de0]], [[#variable60d54d80]]),"compsite": [[#variable60d54cc0]],"dna":None,"freq": [[#variable60d54c60]],"fst3": -24,"fst5": - [[#variable60d54de0]],"inact_temp":65,"opt_temp":37,"ovhg": [[#variable60d54c00]],"ovhgseq": [[#variable60d54b80]],"results":None,"scd3": [[#variable60d54de0]],"scd5":24,"site": [[#variable60d54d80]]

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#60d54de0]]`	10
1	2	`[[#60d54de0]]`	10
1	3	`[[#60d54de0]]`	8
1	4	`[[#60d54de0]]`	8
1	5	`[[#60d54de0]]`	8
2	1	`[[#60d54d80]]`	"GCANNNNNNTGC"
2	2	`[[#60d54d80]]`	"CGANNNNNNTGC"
2	3	`[[#60d54d80]]`	"GAGNNNNNCTC"
2	4	`[[#60d54d80]]`	"AAGNNNNNCTT"
2	5	`[[#60d54d80]]`	"GAYNNNNNVTC"
3	1	`[[#60d54cc0]]`	"(?P<AlfI>GCA......TGC)\|(?P<AlfI_as>GCA......TGC)"
3	2	`[[#60d54cc0]]`	"(?P<BcgI>CGA......TGC)\|(?P<BcgI_as>GCA......TCG)"
3	3	`[[#60d54cc0]]`	"(?P<BplI>GAG.....CTC)\|(?P<BplI_as>GAG.....CTC)"
3	4	`[[#60d54cc0]]`	"(?P<FalI>AAG.....CTT)\|(?P<FalI_as>AAG.....CTT)"
3	5	`[[#60d54cc0]]`	"(?P<Hin4I>GA[CT].....[ACG]TC)\|(?P<Hin4I_as>GA[CGT].....[AG]TC)"
4	1	`[[#60d54c60]]`	4096
4	2	`[[#60d54c60]]`	4096
4	3	`[[#60d54c60]]`	4096
4	4	`[[#60d54c60]]`	4096
4	5	`[[#60d54c60]]`	512
5	1	`[[#60d54c00]]`	2
5	2	`[[#60d54c00]]`	2
5	3	`[[#60d54c00]]`	5
5	4	`[[#60d54c00]]`	5
5	5	`[[#60d54c00]]`	5
6	1	`[[#60d54b80]]`	"NN"
6	2	`[[#60d54b80]]`	"NN"
6	3	`[[#60d54b80]]`	"NNNNN"
6	4	`[[#60d54b80]]`	"NNNNN"
6	5	`[[#60d54b80]]`	"NNNNN"