CloneSet28


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
14560.972test_pair_plus
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
114556
Bio/Restriction/Restriction_Dictionary.py
2141623
Bio/Restriction/Restriction_Dictionary.py
3142192
Bio/Restriction/Restriction_Dictionary.py
4146310
Bio/Restriction/Restriction_Dictionary.py
5146901
Bio/Restriction/Restriction_Dictionary.py
Clone Instance
1
Line Count
14
Source Line
556
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -24,24,10,"GCANNNNNNTGC"),"compsite":"(?P<AlfI>GCA......TGC)|(?P<AlfI_as>GCA......TGC)","dna":None,"freq":4096,"fst3": -24,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":2,"ovhgseq":"NN","results":None,"scd3":10,"scd5":24,"site":"GCANNNNNNTGC"


Clone Instance
2
Line Count
14
Source Line
1623
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -24,24,10,"CGANNNNNNTGC"),"compsite":"(?P<BcgI>CGA......TGC)|(?P<BcgI_as>GCA......TCG)","dna":None,"freq":4096,"fst3": -24,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":2,"ovhgseq":"NN","results":None,"scd3":10,"scd5":24,"site":"CGANNNNNNTGC"


Clone Instance
3
Line Count
14
Source Line
2192
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -8, -24,24,8,"GAGNNNNNCTC"),"compsite":"(?P<BplI>GAG.....CTC)|(?P<BplI_as>GAG.....CTC)","dna":None,"freq":4096,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"GAGNNNNNCTC"


Clone Instance
4
Line Count
14
Source Line
6310
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -8, -24,24,8,"AAGNNNNNCTT"),"compsite":"(?P<FalI>AAG.....CTT)|(?P<FalI_as>AAG.....CTT)","dna":None,"freq":4096,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"AAGNNNNNCTT"


Clone Instance
5
Line Count
14
Source Line
6901
Source File
Bio/Restriction/Restriction_Dictionary.py

           "charac":( -8, -24,24,8,"GAYNNNNNVTC"),"compsite":"(?P<Hin4I>GA[CT].....[ACG]TC)|(?P<Hin4I_as>GA[CGT].....[AG]TC)","dna":None,"freq":512,"fst3": -24,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":8,"scd5":24,"site":"GAYNNNNNVTC"


Clone AbstractionParameter Count: 6Parameter Bindings

"charac":( - [[#variable60d54de0]], -24,24, [[#variable60d54de0]], [[#variable60d54d80]]),"compsite": [[#variable60d54cc0]],"dna":None,"freq": [[#variable60d54c60]],"fst3": -24,"fst5": - [[#variable60d54de0]],"inact_temp":65,"opt_temp":37,"ovhg": [[#variable60d54c00]],"ovhgseq": [[#variable60d54b80]],"results":None,"scd3": [[#variable60d54de0]],"scd5":24,"site": [[#variable60d54d80]]
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#60d54de0]]
10 
12[[#60d54de0]]
10 
13[[#60d54de0]]
8 
14[[#60d54de0]]
8 
15[[#60d54de0]]
8 
21[[#60d54d80]]
"GCANNNNNNTGC" 
22[[#60d54d80]]
"CGANNNNNNTGC" 
23[[#60d54d80]]
"GAGNNNNNCTC" 
24[[#60d54d80]]
"AAGNNNNNCTT" 
25[[#60d54d80]]
"GAYNNNNNVTC" 
31[[#60d54cc0]]
"(?P<AlfI>GCA......TGC)|(?P<AlfI_as>GCA......TGC)" 
32[[#60d54cc0]]
"(?P<BcgI>CGA......TGC)|(?P<BcgI_as>GCA......TCG)" 
33[[#60d54cc0]]
"(?P<BplI>GAG.....CTC)|(?P<BplI_as>GAG.....CTC)" 
34[[#60d54cc0]]
"(?P<FalI>AAG.....CTT)|(?P<FalI_as>AAG.....CTT)" 
35[[#60d54cc0]]
"(?P<Hin4I>GA[CT].....[ACG]TC)|(?P<Hin4I_as>GA[CGT].....[AG]TC)" 
41[[#60d54c60]]
4096 
42[[#60d54c60]]
4096 
43[[#60d54c60]]
4096 
44[[#60d54c60]]
4096 
45[[#60d54c60]]
512 
51[[#60d54c00]]
2 
52[[#60d54c00]]
2 
53[[#60d54c00]]
5 
54[[#60d54c00]]
5 
55[[#60d54c00]]
5 
61[[#60d54b80]]
"NN" 
62[[#60d54b80]]
"NN" 
63[[#60d54b80]]
"NNNNN" 
64[[#60d54b80]]
"NNNNN" 
65[[#60d54b80]]
"NNNNN"