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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 8 | 2 | 3 | 0.977 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 8 | 872 | Bio/PopGen/GenePop/Controller.py |
| 2 | 8 | 882 | Bio/PopGen/GenePop/Controller.py |
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def calc_ibd_diplo(self,fname,stat = "a",scale = "Log",min_dist = 0.00001):
"""Calculates isolation by distance statistics for diploid data.
See _calc_ibd for parameter details.
Note that each pop can only have a single individual and
the individual name has to be the sample coordinates.
"""
return self._calc_ibd(fname,5,stat,scale,min_dist)
#6.6
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def calc_ibd_haplo(self,fname,stat = "a",scale = "Log",min_dist = 0.00001):
"""Calculates isolation by distance statistics for haploid data.
See _calc_ibd for parameter details.
Note that each pop can only have a single individual and
the individual name has to be the sample coordinates.
"""
return self._calc_ibd(fname,6,stat,scale,min_dist)
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def [[#variable61857620]](self,fname,stat = "a",scale = "Log",min_dist = 0.00001): [[#variable61857080]] return self._calc_ibd(fname, [[#variable61857f00]],stat,scale,min_dist) #6.6 |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#61857620]] | calc_ibd_haplo |
| 1 | 2 | [[#61857620]] | calc_ibd_diplo |
| 2 | 1 | [[#61857080]] | """Calculates isolation by distance statistics for haploid data.
See _calc_ibd for parameter details.
Note that each pop can only have a single individual and
the individual name has to be the sample coordinates.
""" |
| 2 | 2 | [[#61857080]] | """Calculates isolation by distance statistics for diploid data.
See _calc_ibd for parameter details.
Note that each pop can only have a single individual and
the individual name has to be the sample coordinates.
""" |
| 3 | 1 | [[#61857f00]] | 6 |
| 3 | 2 | [[#61857f00]] | 5 |