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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 67 | 2 | 5 | 0.992 | stmt_list[13] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 64 | 1089 | Bio/Restriction/Restriction.py |
| 2 | 67 | 1208 | Bio/Restriction/Restriction.py |
| ||||
catalyze = catalyse = classmethod(catalyse)
def is_blunt(self):
"""RE.is_blunt() -> bool.
True if the enzyme produces blunt end.
see also :
RE.is_3overhang()
RE.is_5overhang()
RE.is_unknown()"""
return False
is_blunt = classmethod(is_blunt)
def is_5overhang(self):
"""RE.is_5overhang() -> bool.
True if the enzyme produces 5' overhang sticky end.
see also :
RE.is_3overhang()
RE.is_blunt()
RE.is_unknown()"""
return True
is_5overhang = classmethod(is_5overhang)
def is_3overhang(self):
"""RE.is_3overhang() -> bool.
True if the enzyme produces 3' overhang sticky end.
see also :
RE.is_5overhang()
RE.is_blunt()
RE.is_unknown()"""
return False
is_3overhang = classmethod(is_3overhang)
def overhang(self):
"""RE.overhang() -> str. type of overhang of the enzyme.,
can be "3' overhang", "5' overhang", "blunt", "unknown" """
return "5' overhang"
overhang = classmethod(overhang)
def compatible_end(self,batch = None):
"""RE.compatible_end() -> list.
list of all the enzymes that share compatible end with RE."""
if not batch:batch = AllEnzymes
r = [x for x in iter(AllEnzymes) if x.is_5overhang( ) and x%self]
r.sort( )
return r
compatible_end = classmethod(compatible_end)
def _mod1(self,other):
"""RE._mod1(other) -> bool.
for internal use only
test for the compatibility of restriction ending of RE and other."""
if issubclass(other,Ov5): return self._mod2(other)
else: return False
_mod1 = classmethod(_mod1)
|
| ||||
catalyze = catalyse = classmethod(catalyse)
def is_blunt(self):
"""RE.is_blunt() -> bool.
True if the enzyme produces blunt end.
see also :
RE.is_3overhang()
RE.is_5overhang()
RE.is_unknown()"""
return False
is_blunt = classmethod(is_blunt)
def is_5overhang(self):
"""RE.is_5overhang() -> bool.
True if the enzyme produces 5' overhang sticky end.
see also :
RE.is_3overhang()
RE.is_blunt()
RE.is_unknown()"""
return False
is_5overhang = classmethod(is_5overhang)
def is_3overhang(self):
"""RE.is_3overhang() -> bool.
True if the enzyme produces 3' overhang sticky end.
see also :
RE.is_5overhang()
RE.is_blunt()
RE.is_unknown()"""
return True
is_3overhang = classmethod(is_3overhang)
def overhang(self):
"""RE.overhang() -> str. type of overhang of the enzyme.,
can be "3' overhang", "5' overhang", "blunt", "unknown" """
return "3' overhang"
overhang = classmethod(overhang)
def compatible_end(self,batch = None):
"""RE.compatible_end() -> list.
list of all the enzymes that share compatible end with RE."""
if not batch:batch = AllEnzymes
r = [x for x in iter(AllEnzymes) if x.is_3overhang( ) and x%self]
r.sort( )
return r
compatible_end = classmethod(compatible_end)
def _mod1(self,other):
"""RE._mod1(other) -> bool.
for internal use only
test for the compatibility of restriction ending of RE and other."""
#
# called by RE._mod1(other) when the one of the enzyme is ambiguous
#
if issubclass(other,Ov3): return self._mod2(other)
else: return False
_mod1 = classmethod(_mod1)
|
| |||
catalyze = catalyse = classmethod(catalyse)
def is_blunt(self):
"""RE.is_blunt() -> bool.
True if the enzyme produces blunt end.
see also :
RE.is_3overhang()
RE.is_5overhang()
RE.is_unknown()"""
return False
is_blunt = classmethod(is_blunt)
def is_5overhang(self):
"""RE.is_5overhang() -> bool.
True if the enzyme produces 5' overhang sticky end.
see also :
RE.is_3overhang()
RE.is_blunt()
RE.is_unknown()"""
return [[#variable4f96dc80]]
is_5overhang = classmethod(is_5overhang)
def is_3overhang(self):
"""RE.is_3overhang() -> bool.
True if the enzyme produces 3' overhang sticky end.
see also :
RE.is_5overhang()
RE.is_blunt()
RE.is_unknown()"""
return [[#variable4f96dc00]]
is_3overhang = classmethod(is_3overhang)
def overhang(self):
"""RE.overhang() -> str. type of overhang of the enzyme.,
can be "3' overhang", "5' overhang", "blunt", "unknown" """
return [[#variable4f96da40]]
overhang = classmethod(overhang)
def compatible_end(self,batch = None):
"""RE.compatible_end() -> list.
list of all the enzymes that share compatible end with RE."""
if not batch:batch = AllEnzymes
r = [x for x in iter(AllEnzymes) if x. [[#variable4f96d7a0]]( ) and x%self]
r.sort( )
return r
compatible_end = classmethod(compatible_end)
def _mod1(self,other):
"""RE._mod1(other) -> bool.
for internal use only
test for the compatibility of restriction ending of RE and other."""
#
# called by RE._mod1(other) when the one of the enzyme is ambiguous
#
if issubclass(other, [[#variable2dc29e00]]): return self._mod2(other)
else: return False
_mod1 = classmethod(_mod1)
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#4f96dc80]] | False |
| 1 | 2 | [[#4f96dc80]] | True |
| 2 | 1 | [[#4f96dc00]] | True |
| 2 | 2 | [[#4f96dc00]] | False |
| 3 | 1 | [[#4f96da40]] | "3' overhang" |
| 3 | 2 | [[#4f96da40]] | "5' overhang" |
| 4 | 1 | [[#4f96d7a0]] | is_3overhang |
| 4 | 2 | [[#4f96d7a0]] | is_5overhang |
| 5 | 1 | [[#2dc29e00]] | Ov3 |
| 5 | 2 | [[#2dc29e00]] | Ov5 |