CloneSet54


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Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
67250.992stmt_list[13]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
1641089
Bio/Restriction/Restriction.py
2671208
Bio/Restriction/Restriction.py
Clone Instance
1
Line Count
64
Source Line
1089
Source File
Bio/Restriction/Restriction.py

    catalyze = catalyse = classmethod(catalyse) 

    def is_blunt(self): 
        """RE.is_blunt() -> bool.

        True if the enzyme produces blunt end.

        see also :
            RE.is_3overhang()
            RE.is_5overhang()
            RE.is_unknown()""" 
        return False 
    is_blunt = classmethod(is_blunt) 

    def is_5overhang(self): 
        """RE.is_5overhang() -> bool.

        True if the enzyme produces 5' overhang sticky end.

        see also :
            RE.is_3overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
        return True 
    is_5overhang = classmethod(is_5overhang) 

    def is_3overhang(self): 
        """RE.is_3overhang() -> bool.

        True if the enzyme produces 3' overhang sticky end.

        see also :
            RE.is_5overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
        return False 
    is_3overhang = classmethod(is_3overhang) 

    def overhang(self): 
        """RE.overhang() -> str. type of overhang of the enzyme.,

        can be "3' overhang", "5' overhang", "blunt", "unknown"   """ 
        return "5' overhang" 
    overhang = classmethod(overhang) 

    def compatible_end(self,batch = None): 
         """RE.compatible_end() -> list.

        list of all the enzymes that share compatible end with RE.""" 
         if not batch:batch = AllEnzymes 
         r = [x for x in iter(AllEnzymes) if x.is_5overhang( ) and x%self] 
         r.sort( ) 
         return r 
    compatible_end = classmethod(compatible_end) 

    def _mod1(self,other):  
        """RE._mod1(other) -> bool.

        for internal use only
        
        test for the compatibility of restriction ending of RE and other.""" 
        if issubclass(other,Ov5):   return self._mod2(other) 
        else:  return False 
    _mod1 = classmethod(_mod1) 


Clone Instance
2
Line Count
67
Source Line
1208
Source File
Bio/Restriction/Restriction.py

    catalyze = catalyse = classmethod(catalyse) 

    def is_blunt(self): 
        """RE.is_blunt() -> bool.

        True if the enzyme produces blunt end.

        see also :
            RE.is_3overhang()
            RE.is_5overhang()
            RE.is_unknown()""" 
        return False 
    is_blunt = classmethod(is_blunt) 

    def is_5overhang(self): 
        """RE.is_5overhang() -> bool.

        True if the enzyme produces 5' overhang sticky end.

        see also :
            RE.is_3overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
        return False 
    is_5overhang = classmethod(is_5overhang) 

    def is_3overhang(self): 
        """RE.is_3overhang() -> bool.

        True if the enzyme produces 3' overhang sticky end.

        see also :
            RE.is_5overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
        return True 
    is_3overhang = classmethod(is_3overhang) 

    def overhang(self): 
        """RE.overhang() -> str. type of overhang of the enzyme.,

        can be "3' overhang", "5' overhang", "blunt", "unknown"   """ 
        return "3' overhang" 
    overhang = classmethod(overhang) 

    def compatible_end(self,batch = None): 
         """RE.compatible_end() -> list.

        list of all the enzymes that share compatible end with RE.""" 
         if not batch:batch = AllEnzymes 
         r = [x for x in iter(AllEnzymes) if x.is_3overhang( ) and x%self] 
         r.sort( ) 
         return r 
    compatible_end = classmethod(compatible_end) 

    def _mod1(self,other):  
        """RE._mod1(other) -> bool.

        for internal use only
        
        test for the compatibility of restriction ending of RE and other.""" 
        #
        #   called by RE._mod1(other) when the one of the enzyme is ambiguous
        #
        if issubclass(other,Ov3):   return self._mod2(other) 
        else:  return False 
    _mod1 = classmethod(_mod1) 


Clone AbstractionParameter Count: 5Parameter Bindings

catalyze = catalyse = classmethod(catalyse) 

def is_blunt(self):
  """RE.is_blunt() -> bool.

        True if the enzyme produces blunt end.

        see also :
            RE.is_3overhang()
            RE.is_5overhang()
            RE.is_unknown()""" 
  return False 
is_blunt = classmethod(is_blunt) 

def is_5overhang(self):
  """RE.is_5overhang() -> bool.

        True if the enzyme produces 5' overhang sticky end.

        see also :
            RE.is_3overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
  return [[#variable4f96dc80]]
is_5overhang = classmethod(is_5overhang) 

def is_3overhang(self):
  """RE.is_3overhang() -> bool.

        True if the enzyme produces 3' overhang sticky end.

        see also :
            RE.is_5overhang()
            RE.is_blunt()
            RE.is_unknown()""" 
  return [[#variable4f96dc00]]
is_3overhang = classmethod(is_3overhang) 

def overhang(self):
  """RE.overhang() -> str. type of overhang of the enzyme.,

        can be "3' overhang", "5' overhang", "blunt", "unknown"   """ 
  return [[#variable4f96da40]]
overhang = classmethod(overhang) 

def compatible_end(self,batch = None):
  """RE.compatible_end() -> list.

        list of all the enzymes that share compatible end with RE.""" 
  if not batch:batch = AllEnzymes 
  r = [x for x in iter(AllEnzymes) if x. [[#variable4f96d7a0]]( ) and x%self] 
  r.sort( ) 
  return r 
compatible_end = classmethod(compatible_end) 

def _mod1(self,other):
  """RE._mod1(other) -> bool.

        for internal use only
        
        test for the compatibility of restriction ending of RE and other.""" 
  #
  #   called by RE._mod1(other) when the one of the enzyme is ambiguous
  #
  if issubclass(other, [[#variable2dc29e00]]): return self._mod2(other) 
  else: return False 
_mod1 = classmethod(_mod1) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#4f96dc80]]
False 
12[[#4f96dc80]]
True 
21[[#4f96dc00]]
True 
22[[#4f96dc00]]
False 
31[[#4f96da40]]
"3' overhang" 
32[[#4f96da40]]
"5' overhang" 
41[[#4f96d7a0]]
is_3overhang 
42[[#4f96d7a0]]
is_5overhang 
51[[#2dc29e00]]
Ov3 
52[[#2dc29e00]]
Ov5