| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 84 | 2 | 2 | 0.985 | file_input_element_list[2] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 84 | 25 | Bio/SwissProt/__init__.py |
| 2 | 83 | 84 | Bio/SwissProt/SProt.py |
| ||||
class Record:
"""Holds information from a SwissProt record.
Members:
entry_name Name of this entry, e.g. RL1_ECOLI.
data_class Either 'STANDARD' or 'PRELIMINARY'.
molecule_type Type of molecule, 'PRT',
sequence_length Number of residues.
accessions List of the accession numbers, e.g. ['P00321']
created A tuple of (date, release).
sequence_update A tuple of (date, release).
annotation_update A tuple of (date, release).
description Free-format description.
gene_name Gene name. See userman.txt for description.
organism The source of the sequence.
organelle The origin of the sequence.
organism_classification The taxonomy classification. List of strings.
(http://www.ncbi.nlm.nih.gov/Taxonomy/)
taxonomy_id A list of NCBI taxonomy id's.
host_organism A list of NCBI taxonomy id's of the hosts of a virus,
if any.
references List of Reference objects.
comments List of strings.
cross_references List of tuples (db, id1[, id2][, id3]). See the docs.
keywords List of the keywords.
features List of tuples (key name, from, to, description).
from and to can be either integers for the residue
numbers, '<', '>', or '?'
seqinfo tuple of (length, molecular weight, CRC32 value)
sequence The sequence.
"""
def __init__(self):
self.entry_name = None
self.data_class = None
self.molecule_type = None
self.sequence_length = None
self.accessions = [ ]
self.created = None
self.sequence_update = None
self.annotation_update = None
self.description = [ ]
self.gene_name = ""
self.organism = [ ]
self.organelle = ""
self.organism_classification = [ ]
self.taxonomy_id = [ ]
self.host_organism = [ ]
self.references = [ ]
self.comments = [ ]
self.cross_references = [ ]
self.keywords = [ ]
self.features = [ ]
self.seqinfo = None
self.sequence = ""
class Reference:
"""Holds information from one reference in a SwissProt entry.
Members:
number Number of reference in an entry.
positions Describes extent of work. list of strings.
comments Comments. List of (token, text).
references References. List of (dbname, identifier)
authors The authors of the work.
title Title of the work.
location A citation for the work.
"""
def __init__(self):
self.number = None
self.positions = [ ]
self.comments = [ ]
self.references = [ ]
self.authors = [ ]
self.title = [ ]
self.location = [ ]
|
| ||||
class Record:
"""Holds information from a SwissProt record.
Members:
entry_name Name of this entry, e.g. RL1_ECOLI.
data_class Either 'STANDARD' or 'PRELIMINARY'.
molecule_type Type of molecule, 'PRT',
sequence_length Number of residues.
accessions List of the accession numbers, e.g. ['P00321']
created A tuple of (date, release).
sequence_update A tuple of (date, release).
annotation_update A tuple of (date, release).
description Free-format description.
gene_name Gene name. See userman.txt for description.
organism The source of the sequence.
organelle The origin of the sequence.
organism_classification The taxonomy classification. List of strings.
(http://www.ncbi.nlm.nih.gov/Taxonomy/)
taxonomy_id A list of NCBI taxonomy id's.
host_organism A list of NCBI taxonomy id's of the hosts of a virus,
if any.
references List of Reference objects.
comments List of strings.
cross_references List of tuples (db, id1[, id2][, id3]). See the docs.
keywords List of the keywords.
features List of tuples (key name, from, to, description).
from and to can be either integers for the residue
numbers, '<', '>', or '?'
seqinfo tuple of (length, molecular weight, CRC32 value)
sequence The sequence.
"""
def __init__(self):
self.entry_name = None
self.data_class = None
self.molecule_type = None
self.sequence_length = None
self.accessions = [ ]
self.created = None
self.sequence_update = None
self.annotation_update = None
self.description = ""
self.gene_name = ""
self.organism = ""
self.organelle = ""
self.organism_classification = [ ]
self.taxonomy_id = [ ]
self.host_organism = [ ]
self.references = [ ]
self.comments = [ ]
self.cross_references = [ ]
self.keywords = [ ]
self.features = [ ]
self.seqinfo = None
self.sequence = ""
class Reference:
"""Holds information from 1 references in a SwissProt entry.
Members:
number Number of reference in an entry.
positions Describes extent of work. list of strings.
comments Comments. List of (token, text).
references References. List of (dbname, identifier)
authors The authors of the work.
title Title of the work.
location A citation for the work.
"""
def __init__(self):
self.number = None
self.positions = [ ]
self.comments = [ ]
self.references = [ ]
self.authors = ""
self.title = ""
self.location = ""
|
| |||
class Record:
"""Holds information from a SwissProt record.
Members:
entry_name Name of this entry, e.g. RL1_ECOLI.
data_class Either 'STANDARD' or 'PRELIMINARY'.
molecule_type Type of molecule, 'PRT',
sequence_length Number of residues.
accessions List of the accession numbers, e.g. ['P00321']
created A tuple of (date, release).
sequence_update A tuple of (date, release).
annotation_update A tuple of (date, release).
description Free-format description.
gene_name Gene name. See userman.txt for description.
organism The source of the sequence.
organelle The origin of the sequence.
organism_classification The taxonomy classification. List of strings.
(http://www.ncbi.nlm.nih.gov/Taxonomy/)
taxonomy_id A list of NCBI taxonomy id's.
host_organism A list of NCBI taxonomy id's of the hosts of a virus,
if any.
references List of Reference objects.
comments List of strings.
cross_references List of tuples (db, id1[, id2][, id3]). See the docs.
keywords List of the keywords.
features List of tuples (key name, from, to, description).
from and to can be either integers for the residue
numbers, '<', '>', or '?'
seqinfo tuple of (length, molecular weight, CRC32 value)
sequence The sequence.
"""
def __init__(self):
self.entry_name = None
self.data_class = None
self.molecule_type = None
self.sequence_length = None
self.accessions = [ ]
self.created = None
self.sequence_update = None
self.annotation_update = None
self.description = [[#variable605deaa0]]
self.gene_name = ""
self.organism = [[#variable605deaa0]]
self.organelle = ""
self.organism_classification = [ ]
self.taxonomy_id = [ ]
self.host_organism = [ ]
self.references = [ ]
self.comments = [ ]
self.cross_references = [ ]
self.keywords = [ ]
self.features = [ ]
self.seqinfo = None
self.sequence = ""
class Reference:
[[#variable605de980]]
def __init__(self):
self.number = None
self.positions = [ ]
self.comments = [ ]
self.references = [ ]
self.authors = [[#variable605deaa0]]
self.title = [[#variable605deaa0]]
self.location = [[#variable605deaa0]]
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#605deaa0]] | [ ] |
| 1 | 2 | [[#605deaa0]] | "" |
| 2 | 1 | [[#605de980]] | """Holds information from one reference in a SwissProt entry.
Members:
number Number of reference in an entry.
positions Describes extent of work. list of strings.
comments Comments. List of (token, text).
references References. List of (dbname, identifier)
authors The authors of the work.
title Title of the work.
location A citation for the work.
""" |
| 2 | 2 | [[#605de980]] | """Holds information from 1 references in a SwissProt entry.
Members:
number Number of reference in an entry.
positions Describes extent of work. list of strings.
comments Comments. List of (token, text).
references References. List of (dbname, identifier)
authors The authors of the work.
title Title of the work.
location A citation for the work.
""" |