CloneSet63


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
20	3	2	0.995	file_input_element_list[2]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	20	533	Bio/AlignIO/StockholmIO.py
2	20	110	Bio/SeqIO/AceIO.py
3	20	147	Bio/SeqIO/PhdIO.py

Clone Instance
1

Line Count
20

Source Line
533

Source File

Bio/AlignIO/StockholmIO.py

def _test( ):
            
    """Run the Bio.SeqIO module's doctests.

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        assert os.path.isfile("Stockholm/simple.sth") 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":   
    _test( )

Clone Instance
2

Line Count
20

Source Line
110

Source File

Bio/SeqIO/AceIO.py

def _test( ):
            
    """Run the Bio.SeqIO module's doctests.

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        assert os.path.isfile("Ace/consed_sample.ace") 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":   
    _test( )

Clone Instance
3

Line Count
20

Source Line
147

Source File

Bio/SeqIO/PhdIO.py

def _test( ):
            
    """Run the Bio.SeqIO.PhdIO module's doctests.

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        assert os.path.isfile("Phd/phd1") 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":   
    _test( )

Clone Abstraction

Parameter Count: 2

Parameter Bindings

def _test( ):
   [[#variable5d01bae0]]
  import doctest 
  import os 
  if os.path.isdir(os.path.join("..","..","Tests")):
  
    print "Runing doctests..." 
    cur_dir = os.path.abspath(os.curdir) 
    os.chdir(os.path.join("..","..","Tests")) 
    assert os.path.isfile( [[#variable5d01baa0]]) 
    doctest.testmod( ) 
    os.chdir(cur_dir) 
    del cur_dir 
    print "Done" 
  
if __name__=="__main__":
  _test( )

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5d01bae0]]`	"""Run the Bio.SeqIO.PhdIO module's doctests. This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """
1	2	`[[#5d01bae0]]`	"""Run the Bio.SeqIO module's doctests. This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """
1	3	`[[#5d01bae0]]`	"""Run the Bio.SeqIO module's doctests. This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """
2	1	`[[#5d01baa0]]`	"Phd/phd1"
2	2	`[[#5d01baa0]]`	"Ace/consed_sample.ace"
2	3	`[[#5d01baa0]]`	"Stockholm/simple.sth"