CloneSet66


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
6	3	4	0.987	stmt_list[3]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	6	164	Bio/SeqIO/_convert.py
2	6	199	Bio/SeqIO/_convert.py
3	6	215	Bio/SeqIO/_convert.py

Clone Instance
1

Line Count
6

Source Line
164

Source File

Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,59)]+[chr(33+int(round(phred_quality_from_solexa(q))))
                                                         for q in range( -5,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping)

Clone Instance
2

Line Count
6

Source Line
199

Source File

Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,59)]+[chr(64+int(round(phred_quality_from_solexa(q))))
                                                         for q in range( -5,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping)

Clone Instance
3

Line Count
6

Source Line
215

Source File

Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,64)]+[chr(64+int(round(solexa_quality_from_phred(q))))
                                                         for q in range(0,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping)

Clone Abstraction

Parameter Count: 4

Parameter Bindings

mapping = "".join([chr(0) for ascii in range(0, [[#variable5d01bce0]])]+[chr( [[#variable77c04300]]+int(round( [[#variable5c08eb40]](q)))) for q in range( [[#variable5d01bc00]],62+1)]+[chr(0) for ascii in range(127,256)]) 
assert len(mapping)==256 
return _fastq_generic(in_handle,out_handle,mapping)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5d01bce0]]`	64
1	2	`[[#5d01bce0]]`	59
1	3	`[[#5d01bce0]]`	59
2	1	`[[#77c04300]]`	64
2	2	`[[#77c04300]]`	64
2	3	`[[#77c04300]]`	33
3	1	`[[#5c08eb40]]`	solexa_quality_from_phred
3	2	`[[#5c08eb40]]`	phred_quality_from_solexa
3	3	`[[#5c08eb40]]`	phred_quality_from_solexa
4	1	`[[#5d01bc00]]`	0
4	2	`[[#5d01bc00]]`	-5
4	3	`[[#5d01bc00]]`	-5