CloneSet85


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
8	2	2	0.951	stmt_list[4]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	8	147	Bio/SeqIO/_convert.py
2	9	180	Bio/SeqIO/_convert.py

Clone Instance
1

Line Count
8

Source Line
147

Source File

Bio/SeqIO/_convert.py

    #Map unexpected chars to null
    trunc_char = chr(1) 
    mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+q) for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 



    assert len(mapping)==256 
    return _fastq_generic2(in_handle,out_handle,mapping,trunc_char,"Data loss - max PHRED quality 62 in Illumina 1.3+ FASTQ")

Clone Instance
2

Line Count
9

Source Line
180

Source File

Bio/SeqIO/_convert.py

    trunc_char = chr(1) 
    mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+int(round(solexa_quality_from_phred(q))))
                                                         for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 



    assert len(mapping)==256 
    return _fastq_generic2(in_handle,out_handle,mapping,trunc_char,"Data loss - max Solexa quality 62 in Solexa FASTQ")

Clone Abstraction

Parameter Count: 2

Parameter Bindings

#Map unexpected chars to null
trunc_char = chr(1) 
mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+ [[#variable5f4b3de0]]) for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 
assert len(mapping)==256 
return _fastq_generic2(in_handle,out_handle,mapping,trunc_char, [[#variable5f904d80]])

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5f4b3de0]]`	q
1	2	`[[#5f4b3de0]]`	int(round(solexa_quality_from_phred(q)))
2	1	`[[#5f904d80]]`	"Data loss - max PHRED quality 62 in Illumina 1.3+ FASTQ"
2	2	`[[#5f904d80]]`	"Data loss - max Solexa quality 62 in Solexa FASTQ"