| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 7 | 5 | 3 | 0.954 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 7 | 2120 | Bio/Restriction/Restriction.py |
| 2 | 7 | 2128 | Bio/Restriction/Restriction.py |
| 3 | 7 | 2137 | Bio/Restriction/Restriction.py |
| 4 | 7 | 2146 | Bio/Restriction/Restriction.py |
| 5 | 7 | 2154 | Bio/Restriction/Restriction.py |
| ||||
def blunt(self,dct = None):
"""A.blunt([dct]) -> dict.
Only the enzymes which have a 3'overhang restriction site."""
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if k.is_blunt( )])
|
| ||||
def overhang5(self,dct = None):
"""A.overhang5([dct]) -> dict.
Only the enzymes which have a 5' overhang restriction site."""
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if k.is_5overhang( )])
|
| ||||
def overhang3(self,dct = None):
"""A.Overhang3([dct]) -> dict.
Only the enzymes which have a 3'overhang restriction site."""
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if k.is_3overhang( )])
|
| ||||
def defined(self,dct = None):
"""A.defined([dct]) -> dict.
Only the enzymes that have a defined restriction site in Rebase."""
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if k.is_defined( )])
|
| ||||
def with_sites(self,dct = None):
"""A.with_sites([dct]) -> dict.
Enzymes which have at least one site in the sequence."""
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if v])
|
| |||
def [[#variable60a7c760]](self,dct = None):
[[#variable60a7c500]]
if not dct:
dct = self.mapping
return dict([(k,v) for k,v in dct.iteritems( ) if [[#variable60a7c560]]])
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#60a7c760]] | with_sites |
| 1 | 2 | [[#60a7c760]] | defined |
| 1 | 3 | [[#60a7c760]] | overhang3 |
| 1 | 4 | [[#60a7c760]] | overhang5 |
| 1 | 5 | [[#60a7c760]] | blunt |
| 2 | 1 | [[#60a7c500]] | """A.with_sites([dct]) -> dict.
Enzymes which have at least one site in the sequence.""" |
| 2 | 2 | [[#60a7c500]] | """A.defined([dct]) -> dict.
Only the enzymes that have a defined restriction site in Rebase.""" |
| 2 | 3 | [[#60a7c500]] | """A.Overhang3([dct]) -> dict.
Only the enzymes which have a 3'overhang restriction site.""" |
| 2 | 4 | [[#60a7c500]] | """A.overhang5([dct]) -> dict.
Only the enzymes which have a 5' overhang restriction site.""" |
| 2 | 5 | [[#60a7c500]] | """A.blunt([dct]) -> dict.
Only the enzymes which have a 3'overhang restriction site.""" |
| 3 | 1 | [[#60a7c560]] | v |
| 3 | 2 | [[#60a7c560]] | k.is_defined( ) |
| 3 | 3 | [[#60a7c560]] | k.is_3overhang( ) |
| 3 | 4 | [[#60a7c560]] | k.is_5overhang( ) |
| 3 | 5 | [[#60a7c560]] | k.is_blunt( ) |