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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 5 | 5 | 6 | 0.952 | block |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 4 | 1287 | Bio/Blast/NCBIStandalone.py |
| 2 | 5 | 1292 | Bio/Blast/NCBIStandalone.py |
| 3 | 5 | 1298 | Bio/Blast/NCBIStandalone.py |
| 4 | 5 | 1319 | Bio/Blast/NCBIStandalone.py |
| 5 | 5 | 1343 | Bio/Blast/NCBIStandalone.py |
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self._params.hsps_no_gap, = _get_cols(line,( -1, ),ncols = 9,expected = {3:"better",7:"gapping:"})
self._params.hsps_no_gap = _safe_int(self._params.hsps_no_gap)
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self._params.hsps_prelim_gapped, = _get_cols(line,( -1, ),ncols = 9,expected = {4:"gapped",6:"prelim"})
self._params.hsps_prelim_gapped = _safe_int(self._params.hsps_prelim_gapped)
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self._params.hsps_prelim_gapped_attempted, = _get_cols(line,( -1, ),ncols = 10,expected = {4:"attempted",7:"prelim"})
self._params.hsps_prelim_gapped_attempted = _safe_int(self._params.hsps_prelim_gapped_attempted)
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self._params.effective_hsp_length, = _get_cols(line,( -1, ),ncols = 4,expected = {1:"HSP",2:"length:"})
self._params.effective_hsp_length = _safe_int(self._params.effective_hsp_length)
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self._params.effective_search_space_used, = _get_cols(line,( -1, ),ncols = 5,expected = {1:"search",3:"used:"})
self._params.effective_search_space_used = _safe_int(self._params.effective_search_space_used)
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self._params. [[#variable77a2aba0]], = _get_cols(line,( -1, ),ncols = [[#variable77a2ab20]],expected = { [[#variable77a2aa80]]: [[#variable77a2aa00]], [[#variable77a2a980]]: [[#variable77a2a920]]})
self._params. [[#variable77a2aba0]]= _safe_int(self._params. [[#variable77a2aba0]])
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| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#77a2aba0]] | effective_search_space_used |
| 1 | 2 | [[#77a2aba0]] | effective_hsp_length |
| 1 | 3 | [[#77a2aba0]] | hsps_prelim_gapped_attempted |
| 1 | 4 | [[#77a2aba0]] | hsps_prelim_gapped |
| 1 | 5 | [[#77a2aba0]] | hsps_no_gap |
| 2 | 1 | [[#77a2ab20]] | 5 |
| 2 | 2 | [[#77a2ab20]] | 4 |
| 2 | 3 | [[#77a2ab20]] | 10 |
| 2 | 4 | [[#77a2ab20]] | 9 |
| 2 | 5 | [[#77a2ab20]] | 9 |
| 3 | 1 | [[#77a2aa80]] | 1 |
| 3 | 2 | [[#77a2aa80]] | 1 |
| 3 | 3 | [[#77a2aa80]] | 4 |
| 3 | 4 | [[#77a2aa80]] | 4 |
| 3 | 5 | [[#77a2aa80]] | 3 |
| 4 | 1 | [[#77a2aa00]] | "search" |
| 4 | 2 | [[#77a2aa00]] | "HSP" |
| 4 | 3 | [[#77a2aa00]] | "attempted" |
| 4 | 4 | [[#77a2aa00]] | "gapped" |
| 4 | 5 | [[#77a2aa00]] | "better" |
| 5 | 1 | [[#77a2a980]] | 3 |
| 5 | 2 | [[#77a2a980]] | 2 |
| 5 | 3 | [[#77a2a980]] | 7 |
| 5 | 4 | [[#77a2a980]] | 6 |
| 5 | 5 | [[#77a2a980]] | 7 |
| 6 | 1 | [[#77a2a920]] | "used:" |
| 6 | 2 | [[#77a2a920]] | "length:" |
| 6 | 3 | [[#77a2a920]] | "prelim" |
| 6 | 4 | [[#77a2a920]] | "prelim" |
| 6 | 5 | [[#77a2a920]] | "gapping:" |