CloneSet94


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
5560.952block
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
141287
Bio/Blast/NCBIStandalone.py
251292
Bio/Blast/NCBIStandalone.py
351298
Bio/Blast/NCBIStandalone.py
451319
Bio/Blast/NCBIStandalone.py
551343
Bio/Blast/NCBIStandalone.py
Clone Instance
1
Line Count
4
Source Line
1287
Source File
Bio/Blast/NCBIStandalone.py

        self._params.hsps_no_gap, = _get_cols(line,( -1, ),ncols = 9,expected = {3:"better",7:"gapping:"}) 

        self._params.hsps_no_gap = _safe_int(self._params.hsps_no_gap) 


Clone Instance
2
Line Count
5
Source Line
1292
Source File
Bio/Blast/NCBIStandalone.py

        self._params.hsps_prelim_gapped, = _get_cols(line,( -1, ),ncols = 9,expected = {4:"gapped",6:"prelim"}) 

        self._params.hsps_prelim_gapped = _safe_int(self._params.hsps_prelim_gapped) 


Clone Instance
3
Line Count
5
Source Line
1298
Source File
Bio/Blast/NCBIStandalone.py

        self._params.hsps_prelim_gapped_attempted, = _get_cols(line,( -1, ),ncols = 10,expected = {4:"attempted",7:"prelim"}) 

        self._params.hsps_prelim_gapped_attempted = _safe_int(self._params.hsps_prelim_gapped_attempted) 


Clone Instance
4
Line Count
5
Source Line
1319
Source File
Bio/Blast/NCBIStandalone.py

        self._params.effective_hsp_length, = _get_cols(line,( -1, ),ncols = 4,expected = {1:"HSP",2:"length:"}) 

        self._params.effective_hsp_length = _safe_int(self._params.effective_hsp_length) 


Clone Instance
5
Line Count
5
Source Line
1343
Source File
Bio/Blast/NCBIStandalone.py

        self._params.effective_search_space_used, = _get_cols(line,( -1, ),ncols = 5,expected = {1:"search",3:"used:"}) 

        self._params.effective_search_space_used = _safe_int(self._params.effective_search_space_used) 


Clone AbstractionParameter Count: 6Parameter Bindings

  self._params. [[#variable77a2aba0]], = _get_cols(line,( -1, ),ncols = [[#variable77a2ab20]],expected = { [[#variable77a2aa80]]: [[#variable77a2aa00]], [[#variable77a2a980]]: [[#variable77a2a920]]}) 
  self._params. [[#variable77a2aba0]]= _safe_int(self._params. [[#variable77a2aba0]]) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#77a2aba0]]
effective_search_space_used 
12[[#77a2aba0]]
effective_hsp_length 
13[[#77a2aba0]]
hsps_prelim_gapped_attempted 
14[[#77a2aba0]]
hsps_prelim_gapped 
15[[#77a2aba0]]
hsps_no_gap 
21[[#77a2ab20]]
5 
22[[#77a2ab20]]
4 
23[[#77a2ab20]]
10 
24[[#77a2ab20]]
9 
25[[#77a2ab20]]
9 
31[[#77a2aa80]]
1 
32[[#77a2aa80]]
1 
33[[#77a2aa80]]
4 
34[[#77a2aa80]]
4 
35[[#77a2aa80]]
3 
41[[#77a2aa00]]
"search" 
42[[#77a2aa00]]
"HSP" 
43[[#77a2aa00]]
"attempted" 
44[[#77a2aa00]]
"gapped" 
45[[#77a2aa00]]
"better" 
51[[#77a2a980]]
3 
52[[#77a2a980]]
2 
53[[#77a2a980]]
7 
54[[#77a2a980]]
6 
55[[#77a2a980]]
7 
61[[#77a2a920]]
"used:" 
62[[#77a2a920]]
"length:" 
63[[#77a2a920]]
"prelim" 
64[[#77a2a920]]
"prelim" 
65[[#77a2a920]]
"gapping:"